Issue 4, 2009

Protein lethality investigated in terms of long range dynamical interactions

Abstract

The relationship between network structure/dynamics and biological function constitutes a fundamental issue in systems biology. However, despite many related investigations, the correspondence between structure and biological functions is not yet fully understood. A related subject that has deserved particular attention recently concerns how essentiality is related to the structure and dynamics of protein interactions. In the current work, protein essentiality is investigated in terms of long range influences in proteinprotein interaction networks by considering simulated dynamical aspects. This analysis is performed with respect to outward activations, an approach which models the propagation of interactions between proteins by considering self-avoiding random walks. The obtained results are compared to protein local connectivity. Both the connectivity and the outward activations were found to be strongly related to protein essentiality.

Graphical abstract: Protein lethality investigated in terms of long range dynamical interactions

Article information

Article type
Paper
Submitted
08 Sep 2008
Accepted
19 Jan 2009
First published
24 Feb 2009

Mol. BioSyst., 2009,5, 385-390

Protein lethality investigated in terms of long range dynamical interactions

F. A. Rodrigues and L. D. F. Costa, Mol. BioSyst., 2009, 5, 385 DOI: 10.1039/B815702M

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