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  • © 2008

RNA-Protein Interaction Protocols

Editors:

  • Various methods for affinity-purifying cellular or in vitro reconstituted RNPs
  • A collection of methods for studying RNA-protein interaction occurred inside a cell
  • Various methods for assaying protein footprints on RNA
  • Various methods for mapping protein regions involved in RNA interaction
  • New methods including quantifying specific RNAs, designing siRNAs, measuring RNPase activity, etc.
  • Example methods in many cellular events

Part of the book series: Methods in Molecular Biology (MIMB, volume 488)

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Table of contents (25 protocols)

  1. Front Matter

    Pages i-xv
  2. RNA Affinity Tags for the Rapid Purification and Investigation of RNAs and RNA–Protein Complexes

    • Scott C. Walker, Felicia H. Scott, Chatchawan Srisawat, David R. Engelke
    Pages 23-40
  3. Quantitative Analysis of Protein-RNA Interactions by Gel Mobility Shift

    • Sean P. Ryder, Michael I. Recht, James R. Williamson
    Pages 99-115
  4. Monitoring Assembly of Ribonucleoprotein Complexes by Isothermal Titration Calorimetry

    • Michael I. Recht, Sean P. Ryder, James R. Williamson
    Pages 117-127
  5. Characterization of RNA—Protein Interactions by Phosphorothioate Footprinting and Its Applications to the Ribosome

    • A. Özlem Tastan Bishop, Ulrich Stelzl, Markus Pech, Knud H. Nierhaus
    Pages 129-151
  6. RNA-Protein Crosslink Mapping Using TEV Protease

    • Ian A. Turner, Chris M. Norman, Mark J. Churcher, Andrew J. Newman
    Pages 201-212
  7. Structural Analysis of Protein-RNA Interactions With Mass Spectrometry

    • Mamuka Kvaratskhelia, Stuart F. J. Le Grice
    Pages 213-219
  8. Analyzing RNA-Protein Crosslinking Sites in Unlabeled Ribonucleoprotein Complexes by Mass Spectrometry

    • Henning Urlaub, Eva Kühn-Hölsken, Reinhard Lührmann
    Pages 221-245
  9. Immunoprecipitation Analysis to Study RNA-Protein Interactions in Xenopus Oocytes

    • Naoto Mabuchi, Kaoru Masuyama, Mutsuhito Ohno
    Pages 257-265

About this book

Due to the vital biological importance of RNA and proteins functioning together within a cell, a protocol volume describing experimental procedures to study their interactions should find a home in many laboratories. RNA-Protein Interaction Protocols, Second Edition updates, complements, and expands upon the popular first edition by providing a collection of cutting-edge techniques developed or refined in the past few years along with tried-and-true methods. The expert contributors explore the isolation and characterization of RNA-protein complexes, the analysis and measurement of RNA-protein interaction, and related novel techniques and strategies. Written in the highly successful Methods in Molecular Biologyâ„¢ series format, the chapters include brief introductions to the material, lists of necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and a Notes section which highlights tips on troubleshooting and avoiding known pitfalls.

Comprehensive and up-to-date, RNA-Protein Interaction Protocols, Second Edition is an ideal guide for researchers continuing the study of this all-important biological partnership.

Reviews

From the reviews of the second edition:

"Detailed protocols for analysis of specific examples of RNA protein interactions are described. … Anyone studying RNA protein interactions should seriously consider reading this book, not only as a technical reference, but also as a source of ideas. … It’s a book for the lab bench and the PIs office. Highly recommended." (Laurence Tiley, Microbiology Today, February, 2009)

"The second edition of RNA-protein interaction protocols is part of the Methods in Molecular Biology series and includes detailed methods covering a wide range of approaches to characterise RNA-protein interactions. … This book … is well written, well indexed and well referenced. Each protocol is described in enough detail to be followed by an experienced user. For an RNA-based laboratory this book provides an excellent description of the latest techniques with particular attention given to manipulation of RNPs from in vivo sources." (Matthew Bentham, British Toxicology Society Newsletter, June-August, 2009)

Editors and Affiliations

  • Molecular Biology Division, Beckman Research Institute of the City of Hope, Duarte, USA

    Ren-Jang Lin

Bibliographic Information

  • Book Title: RNA-Protein Interaction Protocols

  • Editors: Ren-Jang Lin

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-60327-475-3

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2008

  • Hardcover ISBN: 978-1-58829-419-7Published: 25 August 2008

  • Softcover ISBN: 978-1-61737-555-2Published: 19 November 2010

  • eBook ISBN: 978-1-60327-475-3Published: 04 November 2008

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 2

  • Number of Pages: XVI, 416

  • Topics: Biochemistry, general, Cell Biology, Protein Science, Human Genetics

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access