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  • © 2008

Post-Transcriptional Gene Regulation

Editors:

  • Step-by-step instructions that ensure successful results
  • Tricks of the trade and notes on troubleshooting and avoiding known pitfalls

Part of the book series: Methods in Molecular Biology (MIMB, volume 419)

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Table of contents (21 protocols)

  1. Front Matter

    Pages i-xviii
  2. Bioinformatics

    1. Front Matter

      Pages 1-1
    2. Bioinformatic Tools for Studying Post-Transcriptional Gene Regulation: The UAlbany TUTR Collection and Other Informatic Resources

      • Francis Doyle, Christopher Zaleski, Ajish D. George, Erin K. Stenson, Adele Ricciardi, Scott A. Tenenbaum
      Pages 39-52
  3. Fundamental Aspects of the Study of RNA Biology

    1. Front Matter

      Pages 51-51
    2. In-Line Probing Analysis of Riboswitches

      • Elizabeth E. Regulski, Ronald R. Breaker
      Pages 53-67
    3. Advances in RIP-Chip Analysis: RNA-Binding Protein Immunoprecipitation-Microarray Profiling

      • Timothy E. Baroni, Sridar V. Chittur, Ajish D. George, Scott A. Tenenbaum
      Pages 93-108
    4. Biosensors for RNA Aptamers—Protein Interaction

      • Sara Tombelli, Maria Minunni, Marco Mascini
      Pages 109-119
    5. A Tethering Approach to Study Proteins that Activate mRNA Turnover in Human Cells

      • Sandra L. Clement, Jens Lykke-Andersen
      Pages 121-133
    6. RNA Analysis by Biosynthetic Tagging Using 4-Thiouracil and Uracil Phosphoribosyltransferase

      • Gusti M. Zeiner, Michael D. Cleary, Ashley E. Fouts, Christopher D. Meiring, Edward S. Mocarski, John C. Boothroyd
      Pages 135-146
  4. Techniques for Specific Aspects of RNA Biology

    1. Front Matter

      Pages 159-159
    2. Enrichment of Alternatively Spliced Isoforms

      • Julian P. Venables
      Pages 161-170
    3. In Vivo Methods to Assess Polyadenylation Efficiency

      • Lisa K. Hague, Tyra Hall-Pogar, Carol S. Lutz
      Pages 171-185
    4. Analysis of mRNA Partitioning Between the Cytosol and Endoplasmic Reticulum Compartments of Mammalian Cells

      • Samuel B. Stephens, Rebecca D. Dodd, Rachel S. Lerner, Brook M. Pyhtila, Christopher V. Nicchitta
      Pages 197-214
    5. In Vivo and In Vitro Analysis of Poly(A) Length Effects on mRNA Translation

      • Jing Peng, Elizabeth L. Murray, Daniel R. Schoenberg
      Pages 215-230

About this book

In Post-Transcriptional Gene Regulation, renowned authors present current technical approaches to most aspects of post-transcriptional control and provide a useful and versatile laboratory bench resource. With chapters split into sections covering bioinformatics, fundamental aspects of the study of RNA biology, and techniques for specific aspects of RNA biology, the expert authors have filled the book with invaluable tricks of the trade, perfected in their state-of-the-art laboratories.

This new volume from the Methods in Molecular Biology series is convinently divided into three sections. The first section presents a series of bioinformatic approaches to address the use of RNA databases and algorithms to the study of post-transcriptional regulation involving untranslated regions of transcripts. In the second section, a series of methods applicable to fundamental issues in mRNA biology are presented. These include RNA structure/function, mRNP analysis and novel methods for mRNA labeling and isolation. The third section of this volume presents methodologies to study particular aspects of post-transcriptional control. This section includes methods for the study of alternative splicing and 3’ end processing, mRNA localization, mRNA translation, mRNA stability and si/miRNA regulation. Collectively, Post-Transcriptional Gene Regulation provides the reader with a useful and versatile laboratory bench resource that will become an essential reference in the field.

Editors and Affiliations

  • Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, USA

    Jeffrey Wilusz

Bibliographic Information

  • Book Title: Post-Transcriptional Gene Regulation

  • Editors: Jeffrey Wilusz

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-59745-033-1

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2008

  • Hardcover ISBN: 978-1-58829-783-9Published: 14 December 2007

  • Softcover ISBN: 978-1-61737-776-1Published: 19 November 2010

  • eBook ISBN: 978-1-59745-033-1Published: 04 February 2008

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XVIII, 318

  • Number of Illustrations: 56 b/w illustrations

  • Topics: Biochemistry, general, Cell Biology, Human Genetics, Bioinformatics

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 109.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access